per_library_stats.py – Calculate per library statistics

Description:

Given an otu table, compute and print the (min, max, median, mean) number of seqs per library.

Usage: per_library_stats.py [options]

Input Arguments:

Note

[REQUIRED]

-i, --otu_table_fp

Path to the input OTU table (i.e., the output from make_otu_table.py)

Output:

The resulting statistics are written to stdout.

Example:

Calculate statistics on an OTU table (otu_table.txt)

per_library_stats.py -i otu_table.txt