add_taxa.py – Add taxa to OTU table

Description:

This script adds taxa to an OTU table.

Usage: add_taxa.py [options]

Input Arguments:

Note

[REQUIRED]

-i, --otu_file

Path to read otu file

-t, --taxonomy_file

Path to read taxonomy file

[OPTIONAL]

-o, --output_file

Path to write output file [default: stdout]

-m, --id_map_file

Path to read seq id to otu map file [default: None]

Output:

The result of this script is written to stdout, or optionally to the specified file.

Example:

Add taxa to otu file from otus.txt from file taxa.txt:

add_taxa.py -i otus.txt -t taxa.txt