compare_distance_matrices.py – Script for computing Mantel correlations between as set of distance matrices

Description:

Usage: compare_distance_matrices.py [options]

Input Arguments:

Note

[REQUIRED]

-i, --input_dms

The input distance matrices, comma-separated

-o, --output_fp

The output filepath

[OPTIONAL]

-n, --num_iterations

The number of iterations to perform

-s, --sample_id_map_fp

Map of original sample ids to new sample ids [default: None]

Output:

Perform Mantel test on all pairs of four distance matrices, including 1000 Monte Carlo iterations. Write the output to mantel_out.txt.

mantel.py -i weighted_unifrac_dm.txt,unweighted_unifrac_dm.txt,weighted_unifrac_even100_dm.txt,unweighted_unifrac_even100_dm.txt -o mantel_out.txt -n 1000