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split_otu_table.py – Split in a single OTU table into one OTU table per value in a specified field of the mapping file.

Description:

Usage: split_otu_table.py [options]

Input Arguments:

Note

[REQUIRED]

-i, --otu_table_fp
The input otu table
-m, --mapping_fp
The mapping file path
-f, --mapping_field
Mapping column to split otu table on
-o, --output_dir
The output directory

Output:

Split otu_table.txt into per-study OTU tables, and store the results in ./per_study_otu_tables/

split_otu_table.py -i otu_table.txt -m mapping.txt -f Study -o per_study_otu_tables

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