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Non-phylogeny based metrics:
- berger_parker_d
- brillouin_d
- chao1
- chao1_confidence
- dominance
- doubles (# otus with exactly two individuals in sample)
- equitability
- fisher_alpha
- gini index
- goods coverage
- heip_e (note, using heip_e at low (<5) individuals may cause errors
- kempton_taylor_q
- margalef
- mcintosh_d
- mcintosh_e
- menhinick
- michaelis_menten_fit
- observed_species
- osd (observed # otus, singleton OTUs, doubleton OTUs)
- robbins
- shannon (base 2 is used in the logarithms)
- simpson (1 - Dominance)
- simpson_reciprocal (1 / Dominance)
- simpson_e
- singles (# OTUs with exactly one individual present in sample)
- strong
Phylogeny based metrics:
- PD_whole_tree