preferences_file – Example of a prefs file

This shows a generic overview of a preferences file (.txt):

Note

• {

• ‘background_color’:’color_name’,

• ‘sample_coloring’:

  • {

    • ‘Name_for_color_scheme1’:

    • {

      • ‘column’:’mapping_column1’,
      • ‘colors’:{‘Sample1’:’red’,’Sample2’:’blue’},

    • }

  • },

• ‘MONTE_CARLO_GROUP_DISTANCES’:

  • {

    • ‘mapping_column1’: distance_to_use1,
    • ‘mapping_column2’: distance_to_use2,

  • },

• ‘FIELDS’:

  • [

    • ‘mapping_column1’,
    • ‘mapping_column2’,

  • ],

• ‘taxonomy_coloring’:

  • {

    • ‘Taxonomy_Level’:

    • {

      • ‘column’:’summarized_otu_table_column_number2’,

      • ‘colors’:

        • {

          • “Lineage”:(‘color_name1’,”color1_in_hex”),
          • “Lineage”:(‘color_name2’,”color2_in_hsv”),

        • }

    • }

  • }

• }

This shows an example of a Prefs file (.txt):

Note

• {

• ‘background_color’:’black’,

• ‘sample_coloring’:

  • {

    • ‘Samples’:

    • {

      • ‘column’:’SampleID’,
      • ‘colors’:{‘Sample1’:’red’,’Sample2’:’blue’},

    • },

    • ‘TreatmentType’:

    • {

      • ‘column’:’Treatment’,
      • ‘colors’:((‘red’,(0,100,100)),(‘blue’,(240,100,100)))

    • }

  • },

• ‘MONTE_CARLO_GROUP_DISTANCES’:

  • {

    • ‘SampleID’: 10,
    • ‘Treatment’: 10

  • },

• ‘FIELDS’:

  • [

    • ‘SampleID’,
    • ‘Treatment’

  • ],

• ‘taxonomy_coloring’:

  • {

    • ‘Level_3’:

    • {

      • ‘column’:‘3’,

      • ‘colors’:

        • {

          • ‘Root;Bacteria;Bacteroidetes;Flavobacteria’:(‘red’,(0,100,100)),
          • ‘Root;Bacteria;Bacteroidetes;Sphingobacteria’:(‘blue’,(240,100,100))

        • }

    • }

  • }

• }