split_otu_table.py – Split in a single OTU table into one OTU table per value in a specified field of the mapping file.

Description:

Usage: split_otu_table.py [options]

Input Arguments:

Note

[REQUIRED]

-i, --otu_table_fp

The input otu table

-m, --mapping_fp

The mapping file path

-f, --mapping_field

Mapping column to split otu table on

-o, --output_dir

The output directory

Output:

Split otu_table.biom into per-study OTU tables, and store the results in ./per_study_otu_tables/

split_otu_table.py -i otu_table.biom -m Fasting_Map.txt -f Treatment -o per_study_otu_tables