Fungal ITS analysis tutorial (an IPython Notebook): open-reference OTU picking

This tutorial is provided as an IPython Notebook. See the Fungal ITS analysis tutorial IPython Notebook, and follow the steps either in your own IPython Notebook, or just using QIIME from the command line.

Warning

The links in the above notebook won’t work as they represent the output of one specific run of the notebook. You can download the notebook .ipynb file to run it on your own notebook server from the page linked above (see Download notebook link on the top-right of that page).

For more information on using QIIME with IPython, see our recent paper here. You can find more information on the IPython Notebook here, and the nbviewer tool (which we use to display the notebook) here.