Data Files and Other Resources

Data Files

• Greengenes OTUs: February 4th, 2011 (most recent)
• Silva OTUs: Silva release 108 (most recent)
• UNITE reference sequences (for taxonomy assignment of fungal ITS regions): 21Nov2011 (most recent)

Latest Amazon Web Services (AWS) virtual machine identifiers

• QIIME 1.4.0 (release) AMI: ami-458d5b2c
• QIIME 1.4.0 (release) Extra-large AMI: ami-438d5b2a
• QIIME 1.4.0-dev (development) Extra-large AMI: ami-792bfd10

To update the development AMI to the latest svn version of QIIME, run the following commands (this will not work in the release AMIs!):

cd /software/app-deploy-qiime-1.4.0-repository/
python app-deploy.py /software/ -f etc/qiime_1.4.0_repository.conf --force-remove-failed-dirs --force-remove-previous-repos

Older Amazon Web Services (AWS) virtual machine identifiers

• QIIME 1.3.0 (release) AMI: ami-dce51eb5
• QIIME 1.3.0-dev (development) AMI: ami-9ba56bf2