denoiser_worker.py – Start a denoiser worker process

Description:

The workers are automatically started by the denoiser.py script. You usually never need to use this script yourself.

A worker waits for data and does flowgram alignments once it gets it.

Usage: denoiser_worker.py [options]

Input Arguments:

Note

[REQUIRED]

-f, --file_path

Path used as prefix for worker data files[REQUIRED]

-p, --port

Server port [REQUIRED]

-s, --server_address

Server address[REQUIRED]

[OPTIONAL]

-e, --error_profile

Path to error profile [DEFAULT: /Users/caporaso/Dropbox/code/Qiime/qiime/support_files/denoiser/Data/FLX_error_profile.dat]

-c, --counter

Round counter to start this worker with [default: 0]

Output:

Denoise worker writes a log file if verbose flag is set.

Start worker and connect to server listening on port 12345 on the same machine (localhost)

denoiser_worker.py -f seqs.fna -f denoiser_out/worker99 -p 12345 -s localhost