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The QIIME tutorials are documents that illustrate how to use various features of the QIIME. We recommend that all users begin with the QIIME overview tutorial which takes the user through a full analysis of sequencing data. After you’ve begun analyzing your own data, you’ll want to move on to the special-purpose tutorials as needed.
The QIIME development team is very interested in incorporating community-contributed tutorials. Please contact the QIIME Forum if you’re interested in contributing.
Getting started: Sequence processing through OTU tables and phylogenetic trees
Additional Quality Control
Alternative Processing Steps
Experimental QIIME features: these tutorials cover features that should be considered beta QIIME software