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This script takes a tree and bootstrap support file and creates a pdf, colored by bootstrap support.
Usage: make_bootstrapped_tree.py [options]
The result of this script is a pdf file.
In this example, the user supplies a tree file and a text file containing the jackknife support information, which results in a pdf file:
make_bootstrapped_tree.py -m master_tree.tre -s jackknife_support.txt -o jackknife_samples.pdf