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This script generates per-library sff files using a directory of text files, one per library, which list read ID’s to be included.
The ID list files should contain one read ID per line. If a line contains multiple words (separated by whitespace), then only the first word is used. A ‘>’ character is stripped from the beginning of the line, if present. Blank lines in the file are skipped.
Usage: make_per_library_sff.py [options]
The result of this script generates sff files for each library.
Make per-library sff files using input.sff and a directory of libs where each file in the directory contains the id lists for each library:
make_per_library_sff.py -i input.sff -l libs