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Split a single post-split_libraries.py fasta (or post-split_libraries_fastq.py fastq) file into per-sample fasta files. This script requires that the sequences identitifers are in post-split_libraries.py format (i.e., SampleID_SeqID). A file will be created for each unique SampleID.
Usage: split_sequence_file_on_sample_ids.py [options]
This script will produce an output directory with as many files as samples.
Split seqs.fna into one fasta file per sample and store the resulting fasta files in ‘out’
split_sequence_file_on_sample_ids.py -i seqs.fna -o out/
Split seqs.fastq into one fastq file per sample and store the resulting fastq files in ‘out_fastq’
split_sequence_file_on_sample_ids.py -i seqs.fastq --file_type fastq -o out_fastq/