trflp_file_to_otu_table.py – Convert TRFLP text file to an OTU table

Description:

The input for this script is a TRLFP text file. The output of this script is an OTU table text file that can be use with QIIME for further analysis

Usage: trflp_file_to_otu_table.py [options]

Input Arguments:

Note

[REQUIRED]

-i, --input_path

Input path: TRFLP text file

-o, --output_path

Output file: OTU table

Output:

Usage:

You need to pass a TRFLP text, the script will remove not wanted chars sample and otus names, and will add zeros as need it

trflp_file_to_otu_table.py -i trflp_in.txt -o otu_table.biom