identify_missing_files.py – This script checks for the existence of expected files in parallel runs.

Description:

This script checks for the existence of expected files in parallel runs, and is useful for checking the status of a parallel run or for finding out what poller.py is waiting on in a possibly failed run.

Usage: identify_missing_files.py [options]

Input Arguments:

Note

[REQUIRED]

-e, --expected_out_fp

The list of expected output files

Output:

This script does not create any output files.

Example:

Check for the existence of files listed in expected_out_files.txt from a PyNAST alignment run, and print a warning for any that are missing.

identify_missing_files.py -e ALIGN_BQ7_/expected_out_files.txt